STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB8BRAB8B, member RAS oncogene family. (166 aa)    
Predicted Functional Partners:
RAB3IP
Sec2p domain-containing protein.
    
 0.910
TBC1D1
TBC1 domain family member 1.
    
 0.891
SMCR8
SMCR8-C9orf72 complex subunit.
    
 0.885
C9orf72
C9orf72-SMCR8 complex subunit.
    
 0.872
MICALL2
MICAL like 2.
    
 0.871
RILPL2
Rab interacting lysosomal protein like 2.
   
 
 0.858
SNCAIP
Synuclein alpha interacting protein.
    
 0.841
SLC2A4
Solute carrier family 2 member 4; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.835
WDR41
WD repeat domain 41.
     
 0.833
SQSTM1
Sequestosome 1.
    
 0.826
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.