STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THSD7AThrombospondin type 1 domain containing 7A. (1622 aa)    
Predicted Functional Partners:
KCMF1
Potassium channel modulatory factor 1.
      
 0.687
NPHS1
NPHS1 adhesion molecule, nephrin.
      
 0.598
PLA2R1
Uncharacterized protein.
    
 0.570
G3U382_LOXAF
Uncharacterized protein.
    
 0.570
SEMA3B
Semaphorin 3B; Belongs to the semaphorin family.
     
 0.560
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 0.555
SPATA48
Uncharacterized protein.
      
 0.553
ADAMTS13
ADAM metallopeptidase with thrombospondin type 1 motif 13.
     
 0.544
SLITRK1
SLIT and NTRK like family member 1.
   
 
 0.516
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
      
 0.497
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.