Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MBD5Uncharacterized protein. (436 aa)    
Predicted Functional Partners:
G3TST2_LOXAF
Uncharacterized protein.
 
   
  0.975
ASXL2
ASXL transcriptional regulator 2.
   
 0.874
BAP1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.795
MBD6
Methyl-CpG binding domain protein 6.
     
 0.795
KDM1B
Lysine demethylase 1B.
   
 0.650
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.572
FOXK2
Forkhead box K2.
    
 0.570
FOXK1
Forkhead box K1.
    
 0.570
AK9
Uncharacterized protein.
    
 0.562
G3TCK5_LOXAF
Uncharacterized protein.
    
 0.562
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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