STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSX2Msh homeobox 2. (267 aa)    
Predicted Functional Partners:
MSX1
Msh homeobox 1.
   
 0.968
G3U312_LOXAF
Homeobox domain-containing protein.
     
  0.870
MAGED1
MAGE family member D1.
    
 
 0.788
IRF3
IRF tryptophan pentad repeat domain-containing protein.
   
  
 0.718
FGF18
Fibroblast growth factor 18; Belongs to the heparin-binding growth factors family.
     
 0.689
AVPR1A
Vasopressin V1a receptor; Receptor for arginine vasopressin. The activity of this receptor is mediated by G proteins which activate a phosphatidyl- inositol-calcium second messenger system. Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.
    
 
 0.679
HOXC13
Homeobox C13.
   
  
 0.659
FGF4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.656
RUNX2
RUNX family transcription factor 2.
    
 0.655
KRT32
Keratin 32; Belongs to the intermediate filament family.
      
 0.635
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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