STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL6A2Collagen type VI alpha 2 chain. (1008 aa)    
Predicted Functional Partners:
G3T5N3_LOXAF
Uncharacterized protein.
  
0.995
COL1A2
Collagen type I alpha 2 chain.
  
0.967
COL1A1
Collagen type I alpha 1 chain.
  
0.961
VWA2
Von Willebrand factor A domain containing 2.
   
 0.933
COL6A3
Collagen type VI alpha 3 chain.
   
 0.933
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
   
 0.920
ITGA5
Integrin subunit alpha 5; Belongs to the integrin alpha chain family.
   
 0.907
COL5A2
Collagen type V alpha 2 chain.
   
 0.900
ITGA2B
Integrin subunit alpha 2b; Belongs to the integrin alpha chain family.
   
 0.896
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.896
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.