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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NTAN1N-terminal asparagine amidase. (308 aa)    
Predicted Functional Partners:
WDYHV1
WDYHV motif containing 1.
    
 
 0.732
ATE1
Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.
    
 
 0.674
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
 
    
 0.656
CHST4
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.635
TMEM82
Transmembrane protein 82.
      
 0.588
SPATA3
Uncharacterized protein.
      
 0.580
CHST2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.547
PDXDC1
Pyridoxal dependent decarboxylase domain containing 1.
      
 0.543
CEP78
Centrosomal protein 78.
   
  
 0.520
SH3BP4
SH3 domain binding protein 4.
      
 0.515
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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