STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HSPG2Heparan sulfate proteoglycan 2. (3636 aa)    
Predicted Functional Partners:
DAG1
Dystroglycan 1.
   
 0.970
NID1
Nidogen 1.
   
 0.965
NID2
Nidogen 2.
   
 0.911
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
   
 0.899
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
     
 0.897
VEGFA
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
    
 0.875
TINAGL1
Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family.
   
 
 0.832
FBLN2
Fibulin 2.
   
 0.830
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
   
 0.755
ITGA10
Integrin subunit alpha 10; Belongs to the integrin alpha chain family.
   
 0.755
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.