STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIDAReactive intermediate imine deaminase A homolog. (137 aa)    
Predicted Functional Partners:
EEF2
Eukaryotic translation elongation factor 2.
  
 0.652
SDS
Serine dehydratase.
  
 0.639
SDSL
Serine dehydratase like.
  
 0.639
PQBP1
Polyglutamine binding protein 1.
    
   0.579
GOT1
Aspartate aminotransferase.
   
 0.553
UGCG
UDP-glucose ceramide glucosyltransferase.
  
 0.545
SRR
Serine racemase.
  
 0.545
CLPP
ATP-dependent Clp protease proteolytic subunit.
  
  
 0.542
ILVBL
IlvB acetolactate synthase like; Belongs to the TPP enzyme family.
    
 0.541
HACL1
2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.
    
 0.541
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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