STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBNO1Strawberry notch homolog 1. (1392 aa)    
Predicted Functional Partners:
RIF1
Replication timing regulatory factor 1.
   
    0.758
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
    0.684
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
   
    0.681
PDS5A
PDS5 cohesin associated factor A.
   
    0.658
KRT40
Keratin 40; Belongs to the intermediate filament family.
      
 0.637
CDK2AP1
Cyclin dependent kinase 2 associated protein 1.
 
   
 0.627
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
      
 0.602
WAPL
WAPL cohesin release factor.
   
    0.599
NFE2L1
Nuclear factor, erythroid 2 like 1.
      
 0.546
RASGEF1A
RasGEF domain family member 1A.
      
 0.541
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.