STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRUB2TruB pseudouridine synthase family member 2. (303 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domains 2.
   
 0.946
NGRN
Neugrin, neurite outgrowth associated.
    
 0.936
RCC1L
RCC1 like.
   
 0.912
MTERF3
Mitochondrial transcription termination factor 3.
   
 0.885
DDX28
DEAD-box helicase 28.
  
 
 0.884
YARS2
Tyrosine--tRNA ligase.
  
 
 0.863
RPUSD3
RNA pseudouridine synthase D3.
  
 0.852
RPUSD4
RNA pseudouridine synthase D4.
  
 0.851
NOP58
NOP58 ribonucleoprotein.
  
 
 0.825
PUSL1
tRNA pseudouridine synthase.
   
 0.790
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.