STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX1DEAD-box helicase 1. (740 aa)    
Predicted Functional Partners:
FAM98B
Family with sequence similarity 98 member B.
   
 0.994
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.993
RTRAF
RNA transcription, translation and transport factor.
   
 0.985
FAM98A
Family with sequence similarity 98 member A.
   
 0.985
C2orf49
Chromosome 2 open reading frame 49.
    
 0.980
FAM49A
Family with sequence similarity 49 member A.
      
 0.829
ATXN2
Ataxin 2.
    
 
 0.769
G3UKK9_LOXAF
Uncharacterized protein.
      
 0.737
FUS
FUS RNA binding protein.
   
 0.736
TRAF3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
      
 0.733
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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