STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZNF330Zinc finger protein 330. (320 aa)    
Predicted Functional Partners:
GSC
Goosecoid homeobox.
    
   0.790
CLPX
Caseinolytic mitochondrial matrix peptidase chaperone subunit.
    
   0.767
RWDD4
RWD domain-containing protein.
  
   0.728
IL2RG
Fibronectin type-III domain-containing protein.
     
  0.704
G3TR28_LOXAF
RWD domain-containing protein.
   
   0.673
RBM48
RNA binding motif protein 48.
    
 
 0.651
SMPDL3A
Sphingomyelin phosphodiesterase acid like 3A.
      
 0.617
MED31
Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.576
NUDT14
Nudix hydrolase 14.
      
 0.522
G3UG02_LOXAF
ANK_REP_REGION domain-containing protein.
     
 0.496
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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