Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTFR1LMitochondrial fission regulator 1 like. (289 aa)    
Predicted Functional Partners:
ARMC1
Armadillo repeat-containing protein 1.
    
 
 0.763
CSTF1
Cleavage stimulation factor subunit 1.
      
 0.655
TATDN2
Uncharacterized protein.
      
 0.616
VPS33A
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.550
CCDC77
Coiled-coil domain containing 77.
   
  
 0.539
SLC12A8
Solute carrier family 12 member 8.
      
 0.534
USP30
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
      
 0.508
LRRC49
Leucine rich repeat containing 49.
      
 0.502
VPS39
VPS39 subunit of HOPS complex.
      
 0.492
SEC23IP
SEC23 interacting protein.
      
 0.482
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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