STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PATZ1POZ/BTB and AT hook containing zinc finger 1. (687 aa)    
Predicted Functional Partners:
INSL6
IlGF domain-containing protein.
      
 0.737
HACD4
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]
    
 0.666
SNX19
Sorting nexin 19.
      
 0.659
CBFA2T3
CBFA2/RUNX1 partner transcriptional co-repressor 3.
   
 
 0.638
PLP2
Proteolipid protein 2.
      
 0.601
RNF4
Ring finger protein 4.
    
 
 0.594
G3U4L1_LOXAF
RING-type domain-containing protein.
    
 
 0.594
ZBTB24
Zinc finger and BTB domain containing 24.
    
   0.584
RBPMS
RNA binding protein, mRNA processing factor.
    
   0.582
CABS1
Calcium binding protein, spermatid associated 1.
      
 0.544
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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