STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHFPL1LHFPL tetraspan subfamily member 1. (220 aa)    
Predicted Functional Partners:
AMOT
Angiomotin.
   
  
 0.645
TRPC5
Transient receptor potential cation channel subfamily C member 5; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.631
CYTL1
Cytokine like 1.
      
 0.533
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.493
MRPS31
Mitochondrial ribosomal protein S31.
      
 0.487
ALG13
ALG13 UDP-N-acetylglucosaminyltransferase subunit.
      
 0.482
EFHC2
EF-hand domain containing 2.
   
  
 0.430
YIPF6
Protein YIPF.
      
 0.419
G3U1V6_LOXAF
Glyco_tran_28_C domain-containing protein.
      
 0.419
WDR44
WD repeat domain 44.
      
 0.412
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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