STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM106BTransmembrane protein 106B. (275 aa)    
Predicted Functional Partners:
GRN
Granulin precursor.
      
 0.562
SCIN
Scinderin.
 
   
 0.536
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.515
ATP6V1A
ATPase H+ transporting V1 subunit A.
      
 0.514
STAU2
Staufen double-stranded RNA binding protein 2.
      
 0.499
CHMP2B
Charged multivesicular body protein 2B.
   
 
 0.494
TARDBP
TAR DNA binding protein.
    
 
 0.479
MAP6
Microtubule associated protein 6.
    
 0.467
PUM1
Pumilio RNA binding family member 1.
      
 0.454
PUM2
Pumilio RNA binding family member 2.
      
 0.454
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.