STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXC5Homeobox C5. (230 aa)    
Predicted Functional Partners:
HOXA6
Homeobox A6.
   
   0.962
HOXB5
Homeobox B5.
   
   0.928
HOXA7
Homeobox A7.
   
 
 0.906
HOXC4
Homeobox C4.
 
 
 
 0.884
HOXC6
Homeobox C6.
   
 
 0.849
HOXB7
Homeobox B7.
   
   0.743
HOXB6
Homeobox B6.
   
 
 0.738
HOXD4
Homeobox D4.
   
 
 0.683
POLR2G
RNA polymerase II subunit G.
    
  0.670
FOXP1
Fork-head domain-containing protein.
      
 0.591
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.