STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PYM1PYM homolog 1, exon junction complex associated factor. (205 aa)    
Predicted Functional Partners:
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.946
CASC3
CASC3 exon junction complex subunit.
    
 0.932
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.914
G3T6Q3_LOXAF
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.867
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.867
RTN4IP1
Reticulon 4 interacting protein 1.
    
   0.803
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.774
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.774
G3UN69_LOXAF
Uncharacterized protein.
    
 0.718
PNN
Pinin, desmosome associated protein.
     
 0.642
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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