STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LTN1Listerin E3 ubiquitin protein ligase 1. (1766 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
    
 0.973
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.972
ERMN
Ermin.
    
 
 0.909
TCF25
Transcription factor 25.
   
 
 0.825
RPL11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.683
ZNF598
Zinc finger protein 598.
    
 
 0.678
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 
 0.675
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.675
RPL6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
   0.670
RPL8
Ribosomal protein L8.
    
   0.653
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.