Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LTN1Listerin E3 ubiquitin protein ligase 1. (1766 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.991
TCF25
Transcription factor 25.
   
 0.982
ERMN
Ermin.
   
 0.875
RPL15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
    
 0.845
RPL11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 0.842
RPL38
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
  0.831
RPL29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
    
  0.831
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.831
RPL13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
    
  0.828
RPL4
Ribosomal protein L4.
    
  0.828
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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