STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM63Tripartite motif containing 63. (352 aa)    
Predicted Functional Partners:
TRIM55
Tripartite motif containing 55.
   
  0.958
TCAP
Titin-cap.
   
 
 0.855
TRIM54
Tripartite motif containing 54.
   
  0.846
TRIM59
Uncharacterized protein.
   
  0.840
TRIM13
Tripartite motif containing 13.
   
  0.840
SQSTM1
Sequestosome 1.
    
 0.836
FBXO32
F-box protein 32.
      
 0.803
UBE2D1
Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.796
MYLK
Myosin light chain kinase.
   
 
 0.735
G3TGT5_LOXAF
Uncharacterized protein.
   
 
 0.735
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.