STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM6SF1Transmembrane 6 superfamily member 1. (370 aa)    
Predicted Functional Partners:
TMEM182
Transmembrane protein 182.
      
 0.792
MXRA8
Matrix remodeling associated 8.
      
 0.782
ACSBG1
Acyl-CoA synthetase bubblegum family member 1.
      
 0.744
HAPLN4
Hyaluronan and proteoglycan link protein 4.
      
 0.737
CDH15
Cadherin 15; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.654
GRASP
General receptor for phosphoinositides 1 associated scaffold protein.
      
 0.486
EBPL
EBP like.
      
 0.416
TSPAN33
Tetraspanin.
      
 0.411
PLXDC2
Plexin domain containing 2.
      
 0.401
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.