Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUX1Homeobox protein cut-like. (1258 aa)    
Predicted Functional Partners:
TBR1
T-box brain transcription factor 1.
    
 
 0.862
PAX6
Paired box 6.
    
 
 0.750
SATB2
DNA-binding protein SATB.
    
 
 0.680
BCL11B
BAF chromatin remodeling complex subunit BCL11B.
    
 
 0.663
ZNF451
Zinc finger protein 451.
    
 
 0.624
FEZF2
FEZ family zinc finger 2.
    
 
 0.621
GFAP
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
      
 0.619
FOXG1
Uncharacterized protein.
    
 
 0.618
GOSR1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.603
RELN
Reelin.
      
 0.601
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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