STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTCD1Uncharacterized protein. (706 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domains 2.
   
 
 0.892
MTERF3
Mitochondrial transcription termination factor 3.
   
 
 0.870
DDX28
DEAD-box helicase 28.
   
 
 0.842
NGRN
Neugrin, neurite outgrowth associated.
    
 
 0.728
PITRM1
Pitrilysin metallopeptidase 1.
   
  
 0.692
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
   
 0.670
TSFM
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
    
 
 0.668
MRPL51
Mitochondrial ribosomal protein L51.
   
   0.665
MRM1
Mitochondrial rRNA methyltransferase 1.
   
 
 0.642
TRUB2
TruB pseudouridine synthase family member 2.
   
 
 0.633
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.