STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQUBIQ motif and ubiquitin domain containing. (806 aa)    
Predicted Functional Partners:
ARMC3
Armadillo repeat containing 3.
   
 
 0.745
EFCAB1
EF-hand calcium binding domain 1.
   
 0.744
C9orf116
Chromosome 9 open reading frame 116.
    
 
 0.716
C4orf47
Chromosome 4 open reading frame 47.
      
 0.685
ARMC4
Armadillo repeat containing 4.
   
 
 0.583
TMEM79
Transmembrane protein 79.
      
 0.577
ANKRD42
Ankyrin repeat domain 42.
   
 
 0.571
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.551
G3U5R6_LOXAF
Uncharacterized protein.
   
 0.549
CCDC96
DUF4201 domain-containing protein.
   
 
 0.545
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.