STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPG21SPG21 abhydrolase domain containing, maspardin. (308 aa)    
Predicted Functional Partners:
ALDH16A1
Aldedh domain-containing protein.
      
 0.842
ATPAF2
ATP synthase mitochondrial F1 complex assembly factor 2.
   
   0.796
RAB7A
RAB7A, member RAS oncogene family.
    
   0.734
SPG11
SPG11 vesicle trafficking associated, spatacsin.
      
 0.728
VAMP7
Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.
   
   0.720
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.699
CD84
CD84 molecule.
      
 0.693
PAAF1
Proteasomal ATPase associated factor 1.
      
 0.673
SHCBP1
SHC binding and spindle associated 1.
      
 0.664
B3GALT2
Hexosyltransferase.
      
 0.648
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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