STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSTBCystatin B; Belongs to the cystatin family. (104 aa)    
Predicted Functional Partners:
TNFSF13B
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
    
 
 0.928
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
   
 0.867
RRP1B
Ribosomal RNA processing 1B.
      
 0.622
CTSH
Cathepsin H; Belongs to the peptidase C1 family.
   
 0.600
PRICKLE1
Prickle planar cell polarity protein 1.
      
 0.541
TRAPPC10
Uncharacterized protein.
      
 0.537
RRP1
Ribosomal RNA processing 1.
      
 0.533
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.525
APOD
Apolipoprotein D.
      
 0.515
AURKA
Aurora kinase A; Belongs to the protein kinase superfamily.
   
 0.500
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.