Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VCANVersican. (3387 aa)    
Predicted Functional Partners:
DCN
Decorin; May affect the rate of fibrils formation.
   
 0.710
BCAN
Brevican.
    
 0.703
BGN
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
    
 0.686
CD44
CD44 molecule (Indian blood group).
    
 
 0.622
PTPRZ1
Protein tyrosine phosphatase receptor type Z1.
   
 0.552
FAM20C
FAM20C golgi associated secretory pathway kinase.
    
  0.539
TNC
Tenascin C.
   
 0.521
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.514
MMP9
Matrix metallopeptidase 9.
    
 0.480
OMD
Osteomodulin.
    
 0.472
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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