STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1CRasGEF domain family member 1C. (467 aa)    
Predicted Functional Partners:
ISOC1
Isochorismatase domain containing 1.
      
 0.525
LIX1
Limb and CNS expressed 1.
      
 0.520
C1orf115
Chromosome 1 open reading frame 115.
      
 0.451
MAP10
Microtubule associated protein 10.
      
 0.445
FAM13B
Family with sequence similarity 13 member B.
      
 0.444
LYZL4
Lysozyme like 4; Belongs to the glycosyl hydrolase 22 family.
      
 0.442
PLCH1
Phosphoinositide phospholipase C.
      
 0.426
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.