STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1CRasGEF domain family member 1C. (467 aa)    
Predicted Functional Partners:
ISOC1
Isochorismatase domain containing 1.
      
 0.738
C1orf115
Chromosome 1 open reading frame 115.
      
 0.567
LIX1
Limb and CNS expressed 1.
      
 0.563
LYZL4
Lysozyme like 4; Belongs to the glycosyl hydrolase 22 family.
      
 0.554
PLCH1
Phosphoinositide phospholipase C.
      
 0.504
RUFY1
RUN and FYVE domain containing 1.
      
 0.504
MAP10
Microtubule associated protein 10.
      
 0.501
ISOC2
Isochorismatase domain containing 2.
      
 0.496
G3UKK2_LOXAF
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.490
CASZ1
Uncharacterized protein.
      
 0.489
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.