STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDE12Phosphodiesterase 12. (563 aa)    
Predicted Functional Partners:
RNASEL
Uncharacterized protein.
    
 0.825
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.726
YRDC
YrdC N6-threonylcarbamoyltransferase domain containing.
 
    
 0.722
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 0.714
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.709
CNOT9
CCR4-NOT transcription complex subunit 9.
    
 0.688
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 0.684
GPATCH11
G-patch domain containing 11.
    
 0.681
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 0.643
CNOT7
CCR4-NOT transcription complex subunit 7.
   
 0.629
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.