STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPC4APTransient receptor potential cation channel subfamily C member 4 associated protein. (797 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.823
EDEM2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
 
 
  
 0.765
DCAF5
DDB1 and CUL4 associated factor 5.
     
 0.717
DCAF6
DDB1 and CUL4 associated factor 6.
    
 0.680
G3T1T4_LOXAF
WD_REPEATS_REGION domain-containing protein.
   
  
 0.598
CUL4B
Cullin 4B; Belongs to the cullin family.
    
 0.588
CUL4A
Cullin 4A; Belongs to the cullin family.
    
 0.588
DCAF8
DDB1 and CUL4 associated factor 8.
    
 0.531
PHF20
PHD finger protein 20.
      
 0.528
DCAF12
DDB1 and CUL4 associated factor 12.
     
 0.479
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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