STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNALamin A/C; Belongs to the intermediate filament family. (664 aa)    
Predicted Functional Partners:
EMD
Emerin.
    
 0.984
LMNB1
Lamin B1; Belongs to the intermediate filament family.
    
0.981
CASP6
Caspase 6; Belongs to the peptidase C14A family.
   
 0.973
BANF1
Barrier to autointegration factor 1.
   
 0.960
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.920
G3TBD7_LOXAF
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 0.906
G3UJ54_LOXAF
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 0.906
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.903
G3THD9_LOXAF
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.901
G3TW84_LOXAF
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.901
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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