Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3SRC7_LOXAFUncharacterized protein. (502 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
   
 0.868
G3TS51_LOXAF
G-patch domain-containing protein.
    
   0.701
TRIM33
Tripartite motif containing 33.
   
 0.682
AK9
Uncharacterized protein.
    
 0.621
RPL3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.565
TRIM24
Tripartite motif containing 24.
   
  0.549
G3TN60_LOXAF
Uncharacterized protein.
    
 0.529
ZMYM6
Zinc finger MYM-type containing 6.
   
  
 0.519
LIN54
Lin-54 DREAM MuvB core complex component.
    
 
 0.510
G3TCK5_LOXAF
Uncharacterized protein.
    
 0.501
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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