STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC42Coiled-coil domain containing 42. (312 aa)    
Predicted Functional Partners:
CCDC39
Coiled-coil domain containing 39.
   
 
 0.802
CCDC40
Coiled-coil domain containing 40.
   
 
 0.778
CFAP100
Cilia and flagella associated protein 100.
    
 
 0.757
CCDC113
Coiled-coil domain containing 113.
  
 
 0.755
IQCD
IQ motif containing D.
   
 
 0.705
RSPH1
Radial spoke head component 1.
   
 
 0.698
ARMC4
Armadillo repeat containing 4.
   
 
 0.685
NME8
NME/NM23 family member 8.
   
   0.681
CCDC96
DUF4201 domain-containing protein.
   
 
 0.666
G3TC70_LOXAF
Uncharacterized protein.
    
   0.665
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.