STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (479 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.996
WDR46
WD repeat domain 46.
   
 0.986
UTP25
UTP25 small subunit processor component.
   
 
 0.986
EMG1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.981
PDCD11
Programmed cell death 11.
   
 0.981
DDX52
DExD-box helicase 52.
  
0.980
ABT1
Activator of basal transcription 1.
   
 
 0.979
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.975
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.973
DDX47
DEAD-box helicase 47; Belongs to the DEAD box helicase family.
  
 
0.971
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.