STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF1Protein YIPF. (313 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF.
   
 
 0.907
YIPF4
Protein YIPF.
   
 
 0.776
FBXO32
F-box protein 32.
      
 0.737
TRIM63
Tripartite motif containing 63.
      
 0.637
YIPF5
Protein YIPF.
   
 
 0.593
YIPF7
Protein YIPF.
   
 
 0.593
YIPF3
Yip1 domain family member 3.
   
  
 0.571
TMED2
Transmembrane p24 trafficking protein 2.
   
 
 0.559
SELENOS
Selenoprotein S.
   
 
 0.558
WDR83OS
WD repeat domain 83 opposite strand.
   
  
 0.518
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.