STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3SRG9_LOXAFIg-like domain-containing protein; Belongs to the MHC class I family. (340 aa)    
Predicted Functional Partners:
B2M
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
0.722
CD8A
CD8a molecule.
    
 0.590
RPA2
Replication protein A2.
   
 0.585
TAPBP
TAP binding protein.
   
 0.565
G3UEZ8_LOXAF
Ig-like domain-containing protein; Belongs to the MHC class I family.
  
 
0.558
LOC100664409
Ig-like domain-containing protein; Belongs to the MHC class II family.
   
 
0.543
HLA-DMA
Major histocompatibility complex, class II, DM alpha; Belongs to the MHC class II family.
   
 
 0.517
G3SQU2_LOXAF
C-type lectin domain-containing protein.
    
 0.514
G3TQG4_LOXAF
C-type lectin domain-containing protein.
    
 0.514
HLA-DOA
Major histocompatibility complex, class II, DO alpha; Belongs to the MHC class II family.
   
 
0.506
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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