STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARID3BAT-rich interaction domain 3B. (547 aa)    
Predicted Functional Partners:
ARID3A
AT-rich interaction domain 3A.
   
 
 0.819
POU5F1
POU domain protein.
   
 
 0.782
G3UHL2_LOXAF
POU-specific domain-containing protein.
   
 
 0.782
ODF3L1
Outer dense fiber of sperm tails 3 like 1.
      
 0.652
NANOG
Homeobox domain-containing protein.
    
 
 0.624
PBRM1
Polybromo 1.
   
 
 0.604
SHPRH
SNF2 histone linker PHD RING helicase.
   
 0.590
PHTF2
Putative homeodomain transcription factor 2.
   
 
 0.588
ARID5A
AT-rich interaction domain 5A.
      
 0.576
HECTD1
HECT domain E3 ubiquitin protein ligase 1.
   
   0.547
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.