Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALYREFAly/REF export factor. (187 aa)    
Predicted Functional Partners:
THOC2
THO complex 2.
   
 0.997
THOC1
THO complex 1.
    
 0.996
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.996
THOC3
THO complex 3.
   
 0.996
SRSF1
Uncharacterized protein.
   
 0.990
THOC7
THO complex 7.
   
 0.986
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.986
SRRT
Serrate, RNA effector molecule.
   
 0.984
THOC5
THO complex 5.
   
 0.984
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.984
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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