STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF24Ring finger protein 24. (148 aa)    
Predicted Functional Partners:
CLRN3
Clarin 3.
      
 0.858
KCTD9
Potassium channel tetramerization domain containing 9.
      
 0.838
UBOX5
U-box domain containing 5.
    
 0.823
DOCK5
Dedicator of cytokinesis 5; Belongs to the DOCK family.
      
 0.704
APMAP
Adipocyte plasma membrane associated protein.
      
 0.565
ZNF711
Zinc finger protein 711.
    
 
 0.564
CDH22
Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.564
POF1B
POF1B actin binding protein.
      
 0.563
VPS16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
      
 0.557
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.553
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.