STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D20TBC1 domain family member 20. (381 aa)    
Predicted Functional Partners:
RAB1A
RAB1A, member RAS oncogene family.
    
 0.824
RAB1B
RAB1B, member RAS oncogene family.
    
 0.824
RAB3GAP1
RAB3 GTPase activating protein catalytic subunit 1.
      
 0.801
RAB3GAP2
RAB3 GTPase activating non-catalytic protein subunit 2.
      
 0.797
G3TM43_LOXAF
Uncharacterized protein.
      
 0.707
RAB18
RAB18, member RAS oncogene family.
      
 0.696
TBC1D21
TBC1 domain family member 21.
   
  
 0.676
TBC1D7
TBC1 domain family member 7.
      
 0.676
TBC1D16
Rab-GAP TBC domain-containing protein.
      
 0.663
TBC1D13
TBC1 domain family member 13.
      
 0.643
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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