STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSF1Remodeling and spacing factor 1. (1441 aa)    
Predicted Functional Partners:
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.969
SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
   
 0.969
CENPA
Centromere protein A.
    
 0.959
CENPB
Centromere protein B.
    
 
 0.879
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.841
ARID4B
AT-rich interaction domain 4B.
   
 
 0.824
G3UG48_LOXAF
Uncharacterized protein.
   
 
 0.792
CHRAC1
Chromatin accessibility complex subunit 1.
     
 0.761
ATRX
ATRX chromatin remodeler.
   
 0.720
POLE3
DNA polymerase epsilon 3, accessory subunit.
     
 0.716
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.