Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTLL6Tubulin tyrosine ligase like 6. (835 aa)    
Predicted Functional Partners:
CRMP1
Collapsin response mediator protein 1.
    
   0.575
DPYSL3
Dihydropyrimidinase like 3.
    
   0.511
CEP41
Centrosomal protein 41.
      
 0.501
BTBD8
BTB domain containing 8.
      
 0.501
ARL13B
ADP ribosylation factor like GTPase 13B.
      
 0.486
RFX4
Regulatory factor X4.
      
 0.485
SNX11
Sorting nexin 11.
      
 0.484
CEP104
Centrosomal protein 104.
      
 0.481
TTLL5
Tubulin tyrosine ligase like 5.
   
  
 0.479
CDK5RAP3
CDK5 regulatory subunit associated protein 3.
      
 0.471
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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