STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRTAC1Cartilage acidic protein 1. (645 aa)    
Predicted Functional Partners:
MAPRE2
Microtubule associated protein RP/EB family member 2.
    
   0.807
MAPRE3
Microtubule associated protein RP/EB family member 3.
    
   0.665
GPLD1
Glycosylphosphatidylinositol specific phospholipase D1.
    
 
 0.600
CDH22
Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 0.516
TMEM132E
Transmembrane protein 132E.
   
  
 0.505
WDR78
WD repeat domain 78.
   
  
 0.499
GRM4
Glutamate metabotropic receptor 4.
   
  
 0.494
SIM1
SIM bHLH transcription factor 1.
      
 0.480
SIM2
SIM bHLH transcription factor 2.
      
 0.480
CLDN19
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.479
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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