Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT5Synaptotagmin 5. (386 aa)    
Predicted Functional Partners:
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.697
SYT1
Synaptotagmin 1.
   
   0.676
SYT2
Synaptotagmin 2.
   
   0.676
NPTN
Neuroplastin.
   
 
 0.656
VAMP1
Vesicle associated membrane protein 1.
   
 0.633
STX1B
Syntaxin 1B; Belongs to the syntaxin family.
   
 0.615
STX1A
Syntaxin 1A.
   
 0.615
NCKIPSD
NCK interacting protein with SH3 domain.
   
  
 0.595
NCKAP5L
NCK associated protein 5 like.
      
 0.589
UBXN2B
UBX domain protein 2B.
      
 0.589
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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