STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH1AlkB homolog 1, histone H2A dioxygenase. (389 aa)    
Predicted Functional Partners:
ALKBH5
AlkB homolog 5, RNA demethylase.
      
 0.828
ALKBH2
AlkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.826
ALKBH3
AlkB homolog 3, alpha-ketoglutaratedependent dioxygenase.
      
 0.825
ALKBH6
Uncharacterized protein.
   
  
 0.814
ALKBH4
AlkB homolog 4, lysine demethylase.
   
  
 0.811
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.805
ALKBH7
AlkB homolog 7.
      
 0.800
ALKBH8
AlkB homolog 8, tRNA methyltransferase.
      
 0.777
N6AMT1
N-6 adenine-specific DNA methyltransferase 1.
   
  
 0.693
TRMT6
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.677
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.