LSM1 protein (Loxodonta africana) - STRING interaction network

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LSM1

U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)

Predicted Functional Partners:

LSM2

0.999

LSM4

0.998

LSM3

0.998

LSM6

0.997

LSM7

0.997

LSM5

0.985

LSM5-2

0.985

XRN1

0.958

DDX6

0.951

DCP2

0.944

Your Current Organism:

Loxodonta africana

NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCP2	DDX6	ENSLAFP00000011498	ENSLAFP00000009220	Decapping mRNA 2.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.996
DCP2	LSM1	ENSLAFP00000011498	ENSLAFP00000002946	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.944
DCP2	LSM2	ENSLAFP00000011498	ENSLAFP00000013545	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.887
DCP2	LSM3	ENSLAFP00000011498	ENSLAFP00000016898	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.858
DCP2	LSM4	ENSLAFP00000011498	ENSLAFP00000014640	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.974
DCP2	LSM5	ENSLAFP00000011498	ENSLAFP00000018519	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.613
DCP2	LSM5-2	ENSLAFP00000011498	ENSLAFP00000024077	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.613
DCP2	LSM6	ENSLAFP00000011498	ENSLAFP00000001635	Decapping mRNA 2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.693
DCP2	LSM7	ENSLAFP00000011498	ENSLAFP00000019247	Decapping mRNA 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.830
DCP2	XRN1	ENSLAFP00000011498	ENSLAFP00000012933	Decapping mRNA 2.	5'-3' exoribonuclease 1.	0.996
DDX6	DCP2	ENSLAFP00000009220	ENSLAFP00000011498	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Decapping mRNA 2.	0.996
DDX6	LSM1	ENSLAFP00000009220	ENSLAFP00000002946	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.951
DDX6	LSM2	ENSLAFP00000009220	ENSLAFP00000013545	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.925
DDX6	LSM3	ENSLAFP00000009220	ENSLAFP00000016898	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.846
DDX6	LSM4	ENSLAFP00000009220	ENSLAFP00000014640	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.932
DDX6	LSM5	ENSLAFP00000009220	ENSLAFP00000018519	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.532
DDX6	LSM5-2	ENSLAFP00000009220	ENSLAFP00000024077	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.532
DDX6	LSM6	ENSLAFP00000009220	ENSLAFP00000001635	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.886
DDX6	LSM7	ENSLAFP00000009220	ENSLAFP00000019247	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.932
DDX6	XRN1	ENSLAFP00000009220	ENSLAFP00000012933	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	5'-3' exoribonuclease 1.	0.856

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