Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YTHDC2YTH domain containing 2. (1274 aa)    
Predicted Functional Partners:
YTHDC1
YTH domain containing 1.
   
 0.961
PAPOLG
Poly(A) polymerase gamma.
   
 0.953
RBM27
Uncharacterized protein.
   
 0.901
RBM26
RNA binding motif protein 26.
   
 0.897
PAPOLA
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.887
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.885
MTREX
Mtr4 exosome RNA helicase.
   
 0.868
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.860
EXOSC9
Exosome component 9.
   
 0.852
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.846
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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