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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF39Pre-mRNA processing factor 39. (667 aa)    
Predicted Functional Partners:
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
   
 
 0.939
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 
 0.933
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.923
CDC5L
Cell division cycle 5 like.
   
 
 0.914
SNRPN
Small nuclear ribonucleoprotein-associated protein.
    
 
 0.907
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.873
RBM25
PWI domain-containing protein.
   
 
 0.838
G3UCI8_LOXAF
Uncharacterized protein.
   
 
 0.838
PRPF40B
Pre-mRNA processing factor 40 homolog B.
    
 
 0.832
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.830
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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