Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH24Cadherin 24; Cadherins are calcium-dependent cell adhesion proteins. (781 aa)    
Predicted Functional Partners:
CDH12
Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.901
CTNND1
Catenin delta 1.
    
 0.884
CTNNA2
Uncharacterized protein.
   
 0.815
CTNNA2-2
Uncharacterized protein.
   
 0.815
CTNNA1
Catenin alpha 1.
   
 0.815
JUP
Junction plakoglobin.
    
 0.750
LGALSL
Galectin.
     
 0.738
ANKDD1B
Ankyrin repeat and death domain containing 1B.
    
 0.718
CDH13
Cadherin 13.
     
0.716
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.716
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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