Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM39ATransmembrane protein 39A. (488 aa)    
Predicted Functional Partners:
FAM118A
Family with sequence similarity 118 member A.
      
 0.579
PLD6
PLD phosphodiesterase domain-containing protein.
      
 0.493
G3U547_LOXAF
Uncharacterized protein.
      
 0.485
DNAJC18
DnaJ heat shock protein family (Hsp40) member C18.
      
 0.468
RHBDD3
Rhomboid domain containing 3.
      
 0.466
LETM2
Leucine zipper and EF-hand containing transmembrane protein 2.
      
 0.463
SEC63
SEC63 homolog, protein translocation regulator.
      
 0.446
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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